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    Home » Recipe Index » Low Carb Muffins

    Keto Blueberry Muffins - Soft and Fluffy

    by Jennifer Banz · Updated: May 20, 202659 Comments
    4.83 from 23 votes
    Recipe Print Pin

    These keto blueberry muffins are soft, moist, and fluffy with a texture that tastes much closer to a traditional blueberry muffin. I use cottage cheese, almond flour, and a small amount of coconut flour to keep them tender, then press the blueberries into the batter so every muffin has the perfect amount.

    Why You'll Love These Keto Blueberry Muffins

    Jennifer standing in her kitchen

    The first thing I thought when I took a bite of these muffins was that they reminded me of those soft Otis Spunkmeyer blueberry muffins. They are moist, fluffy, and have more of a classic bakery muffin texture than a typical low carb muffin.

    The cottage cheese is a big reason for that. It blends right into the batter, so you do not taste it at all, but it helps keep the muffins soft and moist.

    The small amount of coconut flour helps too. You only need 1 tablespoon, but it gives the muffins more of a traditional crumb instead of a dense or overly wet texture.

    I also make the batter in a high-speed blender so it gets completely smooth and comes together quickly.

    Instead of folding the blueberries into the batter, I press them into each muffin cup. This keeps the berries whole, gives every muffin an even amount, and makes the tops look really pretty after baking.

    They are great for breakfast, snacks, meal prep, or keeping in the freezer when you want something sweet but still low carb.

    I make a lot of keto muffins, but this blueberry version is one of my favorites because the texture is so close to a traditional muffin.

    What Makes These Muffins So Soft and Fluffy

    Keto muffins can be tricky because almond flour does not act like regular flour. It can turn out too dense, too wet, or a little crumbly if the ingredient ratio is off.

    The cottage cheese is what keeps these muffins so moist and soft. Once it is blended into the batter, you do not taste it at all, but it gives the muffins a really tender crumb.

    The tablespoon of coconut flour helps too. It absorbs just enough moisture to give the muffins more of a traditional muffin texture instead of wet or dense.

    I also blend the batter so everything gets smooth and evenly mixed. Then, instead of stirring in the blueberries, I press them into each muffin before baking. This keeps the berries whole, evenly spread out, and keeps the batter from turning purple.

    Ingredients You'll Need

    These keto blueberry muffins use simple low carb baking ingredients, but the cottage cheese and small amount of coconut flour are what make the texture so soft and fluffy.

    ingredients for keto muffins

    Almond flour: Use finely ground blanched almond flour for the best texture. Almond meal is more coarse and can make the muffins heavier.

    Coconut flour: You only need 1 tablespoon, but it helps absorb extra moisture and gives the muffins a more traditional muffin texture.

    Cottage cheese: This keeps the muffins soft, moist, and adds protein. Once it is blended into the batter, you do not taste it.

    Sugar free sweetener: Use your favorite granulated sugar free sweetener. I like one that measures 1:1 with sugar.

    Eggs: The eggs help the muffins rise and hold together.

    Vanilla extract: This gives the muffins that classic sweet bakery flavor.

    Baking powder and salt: Baking powder helps the muffins rise and gives them a lighter, fluffier texture. Salt balances the sweetness and brings out the blueberry and vanilla flavor.

    Blueberries: Fresh blueberries work best for the prettiest muffins, but frozen blueberries can also be used. I like pressing them into each muffin instead of mixing them into the batter so they stay whole and evenly distributed.

    If you want a simple base recipe without blueberries, try my almond flour muffins.

    How To Make Them

    This batter comes together right in the blender, which makes the texture smooth and keeps the recipe really easy.

    Add the cottage cheese, eggs, and vanilla to the blender first for easier blending. Then add the sweetener, almond flour, coconut flour, baking powder, and salt. Blend until the batter is completely smooth.

    Blend until the batter is completely smooth. You should not see any pieces of cottage cheese once it is fully blended.

    Line a 12-cup muffin pan with paper liners, then spray the liners with cooking spray so the muffins do not stick. Divide the batter evenly between the muffin cups.

    Press about 7-9 blueberries into the top of each muffin. I like doing it this way instead of stirring them into the batter because the blueberries stay whole and every muffin gets the right amount.

    Bake at 350F for about 25 minutes, or until the muffins are set in the center and lightly golden on top.

    Let the muffins cool in the pan for a few minutes, then transfer them to a wire rack. For the best result, let them cool completely before serving.

    Tips For the Best Texture

    • Use finely ground almond flour. Almond meal is more coarse and can make the muffins heavier or grainy.
    • Blend the batter until it is completely smooth. This helps the cottage cheese disappear into the batter and gives the muffins a softer texture.
    • Do not skip the coconut flour. You only need 1 tablespoon, but it helps absorb extra moisture and gives the muffins more of a traditional muffin crumb.
    • Spray the muffin liners. Keto muffins can stick more than regular muffins, so I like to spray the inside of the liners before adding the batter.
    • Press the blueberries into the batter instead of mixing them in. This keeps the berries whole, helps every muffin get an even amount, and keeps the batter from turning purple.
    • Let the muffins cool before eating. They will be soft when they first come out of the oven, but the texture gets better as they cool and set.
    Keto blueberry muffin cut in half to show the soft, fluffy inside with blueberries throughout.

    Fresh vs Frozen Blueberries

    Fresh blueberries will give you the prettiest muffins because they stay whole and do not bleed color into the batter as much.

    Frozen blueberries will also work, but don't thaw them first. Use them straight from the freezer and press them into the batter right before baking. They may release a little more color as they bake, but the muffins will still taste great.

    For the cleanest look, fresh blueberries are my first choice. For convenience, frozen blueberries are perfectly fine.

    Substitutions

    Greek yogurt: Greek yogurt still works in place of the cottage cheese. I originally made these muffins with unsweetened Greek yogurt, and they were still moist and fluffy. Cottage cheese gives the muffins a little more of a traditional muffin texture, but Greek yogurt is a good backup.

    Sour cream: Sour cream may also work in place of the cottage cheese, but I prefer cottage cheese or Greek yogurt for this recipe because they blend smoothly and add more protein for fewer calories.

    Sweetener: Use your favorite granulated sugar free sweetener that measures 1:1 with sugar. Just keep in mind that different sweeteners can change the flavor and texture slightly.

    Almond flour: I do not recommend replacing the almond flour with coconut flour. Coconut flour absorbs a lot more liquid, so it cannot be swapped evenly. If you need a nut-free option, sunflower seed flour is the best 1:1 replacement, but it can sometimes turn baked goods slightly green after baking.

    Coconut flour: I would not skip the tablespoon of coconut flour if you want the best texture. It helps absorb extra moisture and gives the muffins a softer, more traditional crumb.

    Blueberries: Fresh or frozen blueberries both work. If using frozen, do not thaw them first.

    Dairy-free: I have not tested this recipe with dairy-free cottage cheese or yogurt, so I cannot say for sure how it would turn out.

    Nut-free: Sunflower seed flour can usually be used as a 1:1 replacement for almond flour and is a good nut-free option. Just know that it can sometimes react with baking powder and turn baked goods slightly green as they cool. They are still safe to eat, but the color can look a little surprising.

    Storage and Freezing

    Store leftover keto blueberry muffins in an airtight container in the refrigerator for up to 1 week. Because these muffins are so moist, I prefer the refrigerator over leaving them on the counter.

    To freeze, let the muffins cool completely, then place them in a freezer-safe bag or container. You can freeze them for up to 3 months.

    When you are ready to eat one, thaw it in the refrigerator overnight or microwave it for about 20 to 30 seconds. They are perfect to keep in the freezer for a quick breakfast, snack, or something sweet after dinner.

    keto blueberry muffins in a storage container in the refrigerator

    Frequently Asked Questions

    Are blueberries keto?

    Blueberries can fit into a keto or low carb diet in smaller portions. This recipe uses 1 cup of blueberries divided between 12 muffins, so you still get the blueberry muffin flavor without using a large amount in each serving.

    Why are my keto muffins sticking to the liners?

    Keto muffins can stick more than traditional muffins, especially when made with almond flour. I recommend spraying the inside of the muffin liners with cooking spray before adding the batter.

    How do I know when the muffins are done?

    The muffins are done when the tops are lightly golden and the centers are set. A toothpick inserted into the center should come out mostly clean. Let them cool before eating because the texture will continue to set as they cool.

    More Keto Muffin Recipes

    If you like keeping low carb muffins on hand for breakfast or snacks, here are a few more to try next. My keto chocolate chip muffins are great when you want something sweet, and my keto banana nut muffins have that classic bakery muffin flavor. For a simple base recipe, try my almond flour muffins, or make my keto blueberry quick bread if you want another easy blueberry recipe.

    Recipe Card

    Keto blueberry muffin cut in half to show the soft, fluffy inside with blueberries throughout.

    Keto Blueberry Muffins - Soft and Fluffy

    Author: Jennifer Banz
    4.8 from 23 votes
    Rate Print SaveSaved! Pin
    Prep 5 minutes mins
    Cook 25 minutes mins
    Total 30 minutes mins
    These keto blueberry muffins are soft, moist, and fluffy with a bakery-style texture. They are made with almond flour, cottage cheese, a little coconut flour, and fresh blueberries for an easy low carb breakfast or snack.
    Servings 12
    Course Breakfast, Dessert, Snack
    Cuisine American

    Ingredients

    • 8 ounces low fat cottage cheese
    • 3 Large Eggs
    • 2 teaspoons Vanilla Extract
    • 2 ½ Cups almond flour (see my favorite on Amazon)
    • ½ Cup sugar free granulated sweetener (see my favorite on Amazon)
    • 1 tablespoon coconut flour
    • 1 teaspoon Baking powder
    • ¼ teaspoon Kosher salt
    • 1 Cup Blueberries

    Equipment

    • standard muffin pan (12, 100 ML cups)

    Method

    1. Preheat your oven to 350F (176C) and line a 12 cup muffin pan with liners. Make sure you spray the inside of the liners with cooking spray so the muffins do not stick.
    2. Add all ingredients (except blueberries), liquid first, to a high speed blender. Blend until a smooth batter forms.
    3. Scoop your batter into the muffin cups evenly using a scoop or spoon. Press 7-9 blueberries into the batter of each muffin. Bake in the oven for 23-25 minutes or until a toothpick comes out almost clean.
    4. Let cool in the tin for a few minutes, then transfer to a wire rack. let cool completely before serving.

    Notes

    • Cottage cheese: I recommend blending the batter until completely smooth so the cottage cheese disappears into the muffins. You will not taste it once they are baked.
    • Greek yogurt option: Unsweetened Greek yogurt can be used in place of the cottage cheese. The texture is still soft and moist, but I prefer cottage cheese for a more traditional muffin crumb.
    • Coconut flour: Do not skip the 1 tablespoon of coconut flour. It helps absorb extra moisture and gives the muffins a better texture.
    • Blueberries: Fresh blueberries give the prettiest muffins. Frozen blueberries also work, but do not thaw them first.
    • Blueberry placement: I like adding the batter to the muffin cups first, then pressing about 7-9 blueberries into each muffin. This keeps the berries whole and evenly distributed.
    • Muffin liners: Spray the inside of the paper liners with cooking spray so the muffins release more easily.
    • Storage: Store leftover muffins in an airtight container in the refrigerator for up to 1 week.
    • Freezing: Let the muffins cool completely, then freeze in a freezer-safe bag or container for up to 3 months. Thaw in the refrigerator or microwave for 20 to 30 seconds.

    Nutrition

    Serving1MuffinCalories194Carbohydrates7gProtein9gFat16gFiber3g

    Did you make this recipe?

    Leave a comment or rating below!

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      Recipe Reviews




    1. Chris Quigley says

      May 14, 2026 at 8:58 pm

      Im yet to try. You mention the importance of coconut flour but it is not included in the ingredient list.

      Reply
      • Jennifer Banz says

        May 15, 2026 at 2:54 pm

        Thank you for letting me know! You need 1 tablespoon.

        Reply
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