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    Home » Recipes » Muffins

    Published: Sep 30, 2019 · Modified: Oct 21, 2020 by Jennifer Banz· 68 Comments

    Keto Pumpkin Cheesecake Muffins

    Servings: 12
    |
    Cals: 237
    |
    Fat: 21
    |
    Carbs: 6
    |
    Fiber: 3
    |
    Protein: 7
    |
    Time: 35 minutes mins
    Jump to Recipe Pin for Later

    Now that Summer is behind us... it's that wonderful time of year where it's all about the comfort food! Keto Pumpkin Cheesecake Muffins is the perfect balance of fall spices and rich cream cheese packed into a yummy keto muffin!

    3 keto pumpkin cheesecake muffins

    Bring the pumpkin spice and everything nice back to your keto/low carb kitchen this fall with this easy, "not your basic" Pumpkin Cheesecake Muffins!

    Fall is my favorite season.. the smells, cooler weather, falling leaves and PUMPKIN!

    So I came up with this super easy Keto Pumpkin Cheesecake Muffins because I want all my friends to share on the pumpkin fun too!

    With the perfect balance of fall spices and rich cream cheese.. these muffins are not your basic pumpkin muffins!

    Let's get started!

    HOW TO MAKE KETO PUMPKIN CHEESECAKE MUFFINS

    For the Sugar free Cheesecake Filling:

    We need to combine 8 ounces softened cream cheese with ¼ cup of powdered Lakanto Sweetener.  Mix it together in a mixing bowl with an electric mixer and set that aside.

    keto pumpkin cheesecake muffins batter in a glass bowl

    Now, let's preheat your oven to 350F and line a 12 cup cupcake tin with liners.

    Make sure to spray the inside of the liners with cooking spray because these muffins are so moist they might stick!

    Now, in a large mixing bowl, combine the almond flour, cinnamon, nutmeg, salt, granulated lakanto and baking soda.

    almond flour, cinnamon,nutmeg,salt,granulated lakanto and baking soda in a glass bowl for keto pumpkin cheesecake muffins

    Once you're finished with that now add in the pumpkin puree, melted butter, vanilla and eggs.

    wet and dry ingredients for keto pumpkin muffins

    Mix into a smooth batter.

    Divide evenly into the muffins cups.  I like to use an ice cream scoop to do this.

    Now spoon in the cream cheese mixture evenly on top of the pumpkin mixture.  The muffin liners will be completely full.

    Swirl the batter with a toothpick or a butter knife.

    keto pumpkin cheesecake muffins in a muffin pan ready to be baked

    Bake in your preheated oven for 25 minutes.

    Warning! Your house will smell amazing!

    Remove from the oven and let stand for 10 minutes before serving.

    keto pumpkin cheesecake muffins

    You won't believe your tastebuds with these sweet and spicy muffins!

    Like this keto friendly treat? Check out my recipes for Keto Chocolate Chip Muffins, One Bowl Banana Bread Muffins or Almond Flour Muffins (super fluffy)!

    ⭐ Did you make this Keto Pumpkin Cheesecake Muffins Recipe?  Tag me on Instagram so I can see! @lowcarbwithjennifer
    keto pumpkin cheesecake muffins

    Keto Pumpkin Cheesecake Muffins

    Author: Jennifer Banz
    5 from 32 votes
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    Prep 10 minutes mins
    Cook 25 minutes mins
    Total 35 minutes mins
    Now that Summer is behind us... it's that wonderful time of year where it's all about the comfort food! Keto Pumpkin Cheesecake Muffins is the perfect balance of fall spices and rich cream cheese packed into a yummy keto muffin! Bring the pumpkin spice and everything nice back to your keto/low carb kitchen this fall with this easy, "not your basic" Pumpkin Cheesecake Muffins! 3 Net Carbs
    Servings 12
    Course Dessert
    Cuisine American

    Ingredients

    • 2 Cups almond flour (see my favorite on Amazon)
    • ½ teaspoon Cinnamon
    • ¼ teaspoon Nutmeg
    • ½ teaspoon Kosher salt
    • ½ Cup sugar free granulated sweetener
    • 1 teaspoon Baking soda
    • 1 Cup Pumpkin puree
    • ¼ Cup Melted Butter
    • 1 teaspoon Vanilla
    • 2 Large Eggs
    • 8 Ounces Cream cheese, softened
    • ¼ Cup sugar free powdered sweetener

    Equipment

    • 4 Tablespoon cookie scoop (60ML)

    Method

    1. Preheat the oven to 350F and line a 12 cup cupcake tin with liners.
    2. Spray the inside of the liners with cooking spray.
    For the Cheesecake Filling:
    1. In a medium mixing bowl, combine the cream cheese and the powdered sweetener with an electric mixer, set aside.
    2. In a large mixing bowl, combine the almond flour, cinnamon, nutmeg, salt, granulated lakanto and baking soda.
    3. Now add in the pumpkin puree, melted butter, vanilla and eggs.
    4. Mix into a smooth batter.
    5. Divide evenly into the muffin cups.
    6. Now spoon in the cream cheese mixture evenly on top of the pumpkin mixture.
    7. Swirl with a toothpick or a butter knife.
    8. Bake in the preheated oven for 25 minutes.
    9. Remove from the oven and let stand for 10 minutes before serving.

    Nutrition

    Serving1muffinCalories237Carbohydrates6gProtein7gFat21gSaturated Fat7gFiber3gSugar2g

    Did you make this recipe?

    Leave a comment or rating below!

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      Recipe Reviews




    1. Anna says

      December 05, 2025 at 11:18 am

      5 stars
      These are a family favorite! My non-keto friends love them - the pumpkin adds so much moisture that you usually don't get in a keto baked good. Making them for the third time in two weeks today!

      Reply
    2. Gaye says

      November 11, 2025 at 4:01 pm

      These look delicious. Do I deduct the fiber from the carb count? Are they 6 carbs or 3 carbs each? I can’t wait to make them!

      Reply
    3. Carrie says

      September 17, 2023 at 1:22 am

      Can you use pumpkin pie spice instead and how much can you use?

      Reply
      • Jennifer Banz says

        September 17, 2023 at 10:13 am

        Yes, 1 teaspoon

        Reply
    4. Terri says

      February 14, 2023 at 6:28 pm

      5 stars
      Just made these and waited for them to cool. They were so good!! I can't wait for my husband to try them. Thank you for the recipe!

      Reply
    5. Becky L says

      January 06, 2023 at 8:06 am

      5 stars
      These pumpkin cheesecake muffins are delicious… made them yesterday

      Reply
    6. Lynn O. says

      October 03, 2022 at 2:28 pm

      Yesterday I made pumpkin bread that was delicious. Since I had pumpkin left I made the pumpkin cheesecake muffins today. They are both delicious! I would think I should refrigerate the muffins and the pumpkin bread would freeze much better? Now onto broccoli cheese soup, I add chicken to the soup. Every recipe of yours I have made are wonderful. Thanks, Lynn

      Reply
    7. Kate says

      September 30, 2022 at 12:14 pm

      5 stars
      This is the best pumpkin cream cheese muffin that I have made since beginning my Keto lifestyle. My non-Keto roommate was very impressed with the texture and flavor. This is a very simple to make recipe that bursts with flavor!!!!!

      Reply
    8. Kim says

      September 06, 2022 at 4:31 pm

      5 stars
      Oh wow! These are so delicious! Made them yesterday and they are amazing. I don’t feel deprived one bit. If you like cheesecake and pumpkin spice, this recipe is for you.

      Reply
    9. Susan says

      August 21, 2022 at 6:55 pm

      5 stars
      Those pumpkin muffins are so so so good! My new recipe for pumpkin muffins since I’m now on keto diet.

      Reply
    10. Judy says

      August 17, 2022 at 12:33 pm

      Your recipes look delicious. I am doing keto and finding it hard but your recipes look great and l want to try some of them

      Reply
    11. Country Roads says

      May 29, 2022 at 11:15 am

      5 stars
      These are delicious and perfectly balanced for spice, cream cheese, and sweetness. Thank you for sharing your recipe!

      Reply
    « Older Comments

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    Hi, I'm Jennifer Banz - Creator behind Low Carb with Jennifer and author of Live Life Keto.

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